Transformer-based sequence correction method for genome assembly polishing

Cell2Sentence: Teaching Large Language Models the Language of Biology

A repository for the Playbook Workflow Builder project.

machine-readable file format for genomic library sequence and structure

Demultiplexing pipeline for sequencing data

Turn your data frame into a tableau style drag and drop UI interface to build visualization in R.

An open-source framework for machine learning and other computations on decentralized data.

Gnuplot 5 packaged in Docker alpine container

Microsoft Genomics implementation of the Broad Institute's Cromwell workflow engine on Azure

HemTools: a collection of NGS pipelines and bioinformatic analyses

A virtual file system adapter for Azure Blob storage

Inference code for CodeLlama models

Interactive Data Visualization in the browser, from Python

Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models

JSON validator derived from AJV supporting ontology and taxonomy validation.

Code for loralib, an implementation of "LoRA: Low-Rank Adaptation of Large Language Models"

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

Demultiplexing pipeline for sequencing data

Customizable workflows based on snakemake and python for the analysis of NGS data

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

Curso de python básico orientado al análisis de datos, en español

A {Windows, macOS, Linux} client recreating the functionality of the Sony Headphones app

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

SL(1): Cure your bad habit of mistyping