Stars
code templates and training materials to perform downstream analysis from scRNA preprocessing
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
An open-source AI agent that brings the power of Gemini directly into your terminal.
Code, necessary data and settings for a conda environment allowing to reproduce the analyses presented in Roux et al., 2025, Rapid and long-lasting remodelling of the blood transcriptome following …
A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution
code templates and training materials to perform downs-tream analysis from nf-core RNAseq pipelines
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
R package with well defined templates for most common pipelines
Copy playlists and liked music from Spotify to YTMusic
Shiny apps for NGS etc based on reusable components created using Shiny modules
A recipe for extremely reproducible enrichment analysis
SuperEasy 100% Local RAG with Ollama + Email RAG
Your agent in your terminal, equipped with local tools: writes code, uses the terminal, browses the web, vision.
Workflow management with Nextflow and nf-core
🎓 A collection of interactive courses for the swirl R package.
nf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.
A Tutorial for Setting R Development Environment with VScode, Dev Containers, and Docker
A simple script that uses OpenAI API to describe photos in a folder and produces a JSON file with output.
An implementation of the Language Server Protocol for R
A GPT-4 AI Tutor Prompt for customizable personalized learning experiences.
igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
Data/files for SAM_Refiner manuscript
This repository will soon be archived, to merge contribution with https://github.com/carpentries-incubator/workflows-nextflow
A DSL for data-driven computational pipelines