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⚡ Dynamically generated stats for your github readmes
Book repository for The Turing Way: a how to guide for reproducible, ethical and collaborative data science
Aggregate results from bioinformatics analyses across many samples into a single report.
VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact to study the spread and evolution of viruses in Canada and …
Nextflow pipeline for hyperparameter optimization of machine learning models
PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes
CV/resume generator for academics and engineers, YAML to PDF
Examples showing how to configure Nextflow to run with Wave containers provisioning service
Integrate Any Omics: Towards genome-wide data integration for patient stratification
Data Science Operations (dso) command line tool
Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
GCP for Bioinformatics Researchers
Your agent in your terminal, equipped with local tools: writes code, uses the terminal, browses the web, vision.
A single cell transcriptomics pipeline for QC, integration and making the data presentable
A cheatsheet for basic best practice in R programming
This repository contains math tutorials I created for Bioinformatics and Computational Biology.
Deconvolution of bulk RNA-seq data using single-cell RNA-seq data as reference
Hone computational biology skills by re-enacting Figure 1 of modern biology papers
A web application for finding and comparing bioinformatics training materials on GitHub and GitLab
A data framework for biology. One API: lakehouse, feature store, lineage, notebooks, ontologies, LIMS, ELN.
Outlier Bio analysis project template
Parsing tools for GTF (gene transfer format) files