Genome Assemby

Beyond Genome Assembly

Teacher	Topic	Recorded video ✔️	Material ✔️
Della Vedova	Introduction to VCF
Della Vedova	Introduction to VCF
Della Vedova	Allineamento e mapping
Della Vedova	Allineamento e mapping

Ciccolella	Local Genome Browser: exploring BAM and VCF files [IGV]
Ciccolella	Experimental analysis using the Genome Browsers
Ciccolella	Introduction to the Genome Browser [UCSC]
Ciccolella	Variants on the Genome Browser [ENSEMBL]

Della Vedova	BCF tools
Della Vedova	BCF tools
Della Vedova	Freebayes
Della Vedova	Sincrono

Della Vedova	Allineamento multiplo
Della Vedova	Motif finding
Della Vedova	Motif finding
Della Vedova	Sincrono

Ciccolella	Introduction to Phylogenetics
Ciccolella	Character-based Phylogenies
Ciccolella	Inferring Phylogenies + UPGMA & NJ
Ciccolella	Inferring Phylogenies with PAUP*

Ciccolella	IQ-Tree & FigTree
Ciccolella	Using BioPhython.Phylo module
Ciccolella	Implementing the code for PP
Ciccolella	Sincrono

Name		Name	Last commit message	Last commit date
Latest commit History 29 Commits
docs		docs
pileup		pileup
pipeline		pipeline
BLOSUM62.csv		BLOSUM62.csv
LICENSE		LICENSE
README.md		README.md
Untitled.ipynb		Untitled.ipynb
Untitled1.ipynb		Untitled1.ipynb
Untitled2.ipynb		Untitled2.ipynb
Untitled3.ipynb		Untitled3.ipynb
annotate-test.vcf		annotate-test.vcf
bga.yml		bga.yml
blast.ipynb		blast.ipynb
consensus.csv		consensus.csv
consensus.ipynb		consensus.ipynb
dot-plot-inversions.ipynb		dot-plot-inversions.ipynb
ena_data_20211229-1506.fasta		ena_data_20211229-1506.fasta
global alignment.ipynb		global alignment.ipynb
hamming.ipynb		hamming.ipynb
local alignment.ipynb		local alignment.ipynb
ls_orchid.fasta		ls_orchid.fasta
motifs.ipynb		motifs.ipynb
record-audio.sh		record-audio.sh
record-jupyter.sh		record-jupyter.sh
score.ipynb		score.ipynb
score1.csv		score1.csv
score2.csv		score2.csv
simple-dna-alignment.fasta		simple-dna-alignment.fasta
unknown.fasta		unknown.fasta