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depthcharge Public
Forked from wfondrie/depthchargeA deep learning toolkit for mass spectrometry
Python Apache License 2.0 UpdatedNov 25, 2025 -
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cut2min-bucket Public
A PyTorch Batch Sampler that buckets by input length and cuts to min size in batch
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bio-attention Public
Simple implementations of attention modules adapted for the biological data domain.
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bento-sc Public
BENchmarking Transformer-Obtained Single-Cell embeddings
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bento-sc-reproducibility Public
Repository containing configs and scripts for full study reproduction
Python MIT License UpdatedApr 8, 2025 -
maldi-nn Public
Deep learning tools and models for MALDI-TOF mass spectra analysis
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st-alpha-progression Public
Streamlit alpha progression data visualizer
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biofilm-amr Public
Code supporting machine learning for AMR prediction in P. aer biofilms
Python MIT License UpdatedFeb 3, 2025 -
teaching Public
Collection of stuff done for teaching at bw26
Jupyter Notebook MIT License UpdatedNov 18, 2024 -
funkyheatmappy Public
Forked from funkyheatmap/funkyheatmappyVisualising data frames as funky heatmaps 📊, the Python implementation
Python MIT License UpdatedNov 15, 2024 -
casanovo Public
Forked from Noble-Lab/casanovoDe Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
Python Apache License 2.0 UpdatedJan 30, 2024 -
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COS-engineering Public
Code supporting machine learning for engineering of COS production in E. coli
Python MIT License UpdatedOct 16, 2023 -
cpg-transformer Public
CpG Transformer for imputation of single-cell methylomes
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