A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets

Source of the VizFaDa web application

GBS-MeDIP: A novel method for parallel identification of genetic and epigenetic variation in the same reduced fraction of genomes across individuals

R methods for generating truncated transcript annotations

Visualisation of epigenomics data

Help you pass the LaTeX compilation by telling you which LaTeX packages are missing to compile your documents

DNA methylation regulates alternative polyadenylation via CTCF and the cohesin complex (2019 paper submission)

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

vtreat is a data frame processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner. Distributed under choice of GPL-2 or GPL-3 license.

A DSL for data-driven computational pipelines

This code supports the backend operations of the FAANG data portal

This code supports the frontend operations of the FAANG data portal

RNAseq analysis notes from Ming Tang

Convert BibTex to Markdown for the Hugo Academic Theme

Apply Mapping Functions in Parallel using Futures

An implementation of the Grammar of Graphics in R

A Curated list of R uses in entreprise

consistent quantification of external RNA-seq data sets

🚀 R package: future: Unified Parallel and Distributed Processing in R for Everyone

Preliminary version of a single-cell filtering tool to remove features with technical variability greater than biological. The definitive version of this package can be found in: https://github.com…

Various UI widgets/components not part of Shiny e.g. alerts, styled buttons

📈SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.

Talk on gWidgets2 given to Edinburgh R User Group in January 2016

Slides or talk notes from EdinbR meetings

The Aroma Project website