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HoMer_workflow Public
Commands and scripts for running HoMer and RANGER-DTL
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evolCCM Public
Forked from beiko-lab/evolCCMR package for CCM (Community Coevolution Model)
R GNU General Public License v3.0 UpdatedOct 14, 2025 -
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
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phydms Public
Forked from jbloomlab/phydmsphylogenetic analyses informed by deep mutational scanning data
HTML GNU General Public License v3.0 UpdatedJun 12, 2024 -
parallel_joblog_summary Public
Summarizing GNU parallel joblog file
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caps_2021_survey Public
CAPS 2021 Postdoc Survey Analysis
R GNU General Public License v3.0 UpdatedMar 1, 2024 -
EMBER3D Public
Forked from kWeissenow/EMBER3DUltra-fast in-silico structure mutation
Python MIT License UpdatedFeb 22, 2024 -
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handy_pop_gen Public
Functions and scripts for computing basic molecular evolution and population genetics metrics, used for multiple projects
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FuncDiv Public
R package for computing alpha and beta contributional diversity metrics
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FuncDiv_manuscript Public
Code used for showcasing the FuncDiv R package
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POMS Public
Phylogenetic Organization of Metagenomic Signals (POMS)
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DA_hackathon_sanity_checks Public
Extra sanity checks for analyses run as part of microbiome differential abundance testing paper. Main repository here: https://github.com/nearinj/Comparison_of_DA_microbiome_methods
R GNU General Public License v3.0 UpdatedSep 28, 2021 -
canola_pseudomonas_RNAseq Public
Data and code used for Cook et al. manuscript
R UpdatedFeb 14, 2021 -
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galaxy_convert_biom Public
Galaxy tools for converting between different BIOM formats or to STAMP
Shell GNU General Public License v3.0 UpdatedMar 19, 2019 -
Myles_GBS_analysis Public
Scripts used to to help automate the ABC SNP calling pipeline
Perl UpdatedJan 3, 2017
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