Official implementation of deep vectorised operators for pulsatile hemodynamics estimation in coronary arteries from a steady-state prior

mBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence conditioning in backprop design through AlphaFold-Multimer. Pre…

CUDA on non-NVIDIA GPUs

A python package for fitting a wide variety of Mixture Models

steady

This repository is for automatic segmentation for aorta geometry, with LoGBNet for voxel segmentation and GNN-LDDMM deformation model for improving surface alignment to the image gradient.

MICCAI 2024: Tri-Plane Mamba: Efficiently Adapting Segment Anything Model for 3D Medical Images

Slim UNETRV2: 3D Image Segmentation for Resource-Limited Medical Portable Devices

Python 3.8+ toolbox for submitting jobs to Slurm

Parallel processing with progress bars

A benchmark for LLMs on complicated tasks in the terminal

Rethinking the Detail-Preserved Integration of Complex Tubular Structures from a Unique Point Cloud Perspective: a Dataset and a Benchmark

A library for working with 3D data using mlx

This repository provides a 3D implementation of DINOv2 for self-supervised pretraining on volumetric (3D) medical images using Lightly, MONAI, and Pytorch Lightning!

Newer version of the KDEEBM code

Six hour hands-on to creating publication-quality plots in R

State is a machine learning model that predicts cellular perturbation response across diverse contexts

H-Net: Hierarchical Network with Dynamic Chunking

This is an official repo for fine-tuning SAM to customized medical images.

Official implementation of “MeshHeart: A Geometric Transformer for Conditional 3D+t Cardiac Mesh Generation“ （Nature Machine Intelligence 2025)