Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF

small pieces of useful code

Small R utilities to generate QC report for small variants VCF

A simple NN classifier to classify numeric data

Annotate SV VCF based on regions overlap

Templates for HTML pages

Shiny app to interact with SQLite DB

Simple class to interact with PanelApp API

Nextflow pipeline for HPO-based prioritization (GADO and Exomiser)

Nextflow variant annotation pipeline

Run Rstudio-server with singularity instance

core functions and classes for Python

convert VCF files to SQL db using Nim language

singularity recipes for bioinformatic analysis

Repository to conveniently import small files into GEL environment

Shiny app to explore and filter annotated variants results from V2

Simple gene-set enrichment analysis using hyper-geometric test

Small utilities used in our SV pipeline

Small set of utility we use to manipulate VCF, written in nim for speed