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mlflow-with-nextflow Public
Local MLflow + Nextflow integration POC for tracking ML experiments in cheminformatics workflows
Python UpdatedOct 27, 2025 -
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nf-chai Public
Forked from seqeralabs/nf-chaiPOC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction
Nextflow Mozilla Public License 2.0 UpdatedAug 3, 2025 -
molkart Public
Forked from nf-core/molkartA pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
Nextflow MIT License UpdatedMay 12, 2025 -
arc-virtual-cell-atlas Public
Forked from ArcInstitute/arc-virtual-cell-atlasArc Virtual Cell Atlas
Jupyter Notebook UpdatedMay 6, 2025 -
pgsc_calc Public
Forked from PGScatalog/pgsc_calcThe Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
Nextflow Apache License 2.0 UpdatedApr 14, 2025 -
chai-lab Public
Forked from chaidiscovery/chai-labChai-1, SOTA model for biomolecular structure prediction
Python Other UpdatedNov 20, 2024 -
MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
JavaScript GNU General Public License v3.0 UpdatedSep 19, 2024 -
nf-whisper Public
Forked from mribeirodantas/nf-whisperProof-of-concept Nextflow pipeline to interact with OpenAI Whisper
Nextflow Apache License 2.0 UpdatedSep 17, 2024 -
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stimulus Public
Forked from nf-core/deepmodeloptimStochastic Testing and Input Manipulation for Unbiased Learning Systems
Python UpdatedApr 29, 2024 -
rnaseq Public
Forked from nf-core/rnaseqRNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
Nextflow MIT License UpdatedJan 8, 2024 -
nf-co.re Public
Forked from nf-core/websiteCode and files for the main nf-core website >>>
PHP MIT License UpdatedJul 11, 2023 -
stable-diffusion-nf Public
Proof-of-concept pipeline for stable diffusion in Nextflow and Tower
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedJul 4, 2022 -
flowcraft Public
Forked from assemblerflow/flowcraftA Nextflow pipeline assembler for genomics 🐳📦
Python GNU General Public License v3.0 UpdatedJan 25, 2022 -
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ampliseq Public
Forked from nf-core/ampliseq16S rRNA amplicon sequencing analysis workflow using QIIME2
Nextflow MIT License UpdatedAug 2, 2021 -
sc2-msspe-bioinfo Public
Forked from czbiohub-sf/sc2-illumina-pipelinebioinformatics for sars-cov-2 msspe protocol
Python UpdatedOct 14, 2020 -
nextflow Public
Forked from nextflow-io/nextflowA DSL for data-driven computational pipelines
Groovy Apache License 2.0 UpdatedOct 14, 2020 -
website-1 Public
Forked from codecheckers/codecheckers.github.ioCODE CHECK project website and material (badges, logos, ...)
HTML Creative Commons Attribution Share Alike 4.0 International UpdatedApr 3, 2020 -
eager Public
Forked from nf-core/eagerA fully reproducible and state of the art ancient DNA analysis pipeline
Nextflow Other UpdatedMar 9, 2020 -
quickstart-nextflow Public
AWS Quick Start Team
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dpa-analysis Public
Nextflow Pipeline for the analysis of Double Progressive Alignment (DPA)
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nf-openshift-jupyterhub Public
Configuration for launching Nextflow in Openshift/k8s with JupyterHub
UpdatedOct 3, 2019 -
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multi-package-containers Public
Forked from BioContainers/multi-package-containersTesting building mulled containers for multi-requirement tools.
UpdatedAug 29, 2019 -
awesome-pipeline Public
Forked from pditommaso/awesome-pipelineA curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
1 UpdatedJul 17, 2019 -
nf-summerschool Public
Forked from cbcrg/nf-phdcourse19Nextflow training material for Summer School in Bioinformatics 2019 at EMBL-EBI
Nextflow MIT License UpdatedJun 24, 2019
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