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An experiment to query Xarray datasets with SQL
A CLI tool to convert your codebase into a single LLM prompt with source tree, prompt templating, and token counting.
Protect conda environments to avoid mistakenly modifying them
✨A MCP server that provides intelligent access to the HoloViz ecosystem for humans and AIs.
Panel and FastAPI to work with multiple OAuth Providers
A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
A CLI tool to auto min pin dependencies in conda YAML files
An LLM-powered knowledge curation system that researches a topic and generates a full-length report with citations.
Python Implementation of Code for ANTS book (Cohen, 2012, MIT Press)
Code for ANTS book (Cohen, 2012, MIT Press)
Analyzing Neural Time Series Data -- but I'm translating it to python
Prediction of traffic patterns in bike sharing systems. Including dashboard for clustering analysis of stations in bike share networks based on traffic patterns.
🚀🧠💬 Supercharged Custom Instructions for ChatGPT (non-coding) and ChatGPT Advanced Data Analysis (coding).
🌈😊 Enjoy animating images into GIFs and MP4s in parallel!
Draw datasets from within Python notebooks.
Quickly and accurately render even the largest data.
Tools to create, edit, and persist annotated regions for HoloViews
Microlog - A continuous profiler/logger for Python with microscopically small recordings, no overhead, and super-fast rendering using PyScript
A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.
Neuronal signature of spatial decision-making during navigation by freely moving rats by using calcium imaging
A repository of neural manifold techniques described and compared in "Neural manifold analysis of brain circuit dynamics in health and disease"
COMPASS Pathways two-dimensional model of linguistic sentiment