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Starred repositories

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An experiment to query Xarray datasets with SQL

Python 46 4 Updated Oct 19, 2025

Task automation action

TypeScript 2 2 Updated Dec 9, 2024

A CLI tool to convert your codebase into a single LLM prompt with source tree, prompt templating, and token counting.

Rust 6,735 377 Updated Nov 3, 2025

Protect conda environments to avoid mistakenly modifying them

Python 15 1 Updated Jun 19, 2024

✨A MCP server that provides intelligent access to the HoloViz ecosystem for humans and AIs.

Python 9 3 Updated Nov 1, 2025

Chat with anndata

Python 1 Updated Sep 18, 2025

Panel and FastAPI to work with multiple OAuth Providers

Python 1 Updated Feb 9, 2025

A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

199 32 Updated Jun 23, 2025

A friend to fetch your data files

Python 704 82 Updated Oct 27, 2025

A CLI tool to auto min pin dependencies in conda YAML files

Python 1 Updated Nov 19, 2024

An LLM-powered knowledge curation system that researches a topic and generates a full-length report with citations.

Python 27,596 2,499 Updated Sep 30, 2025

Python Implementation of Code for ANTS book (Cohen, 2012, MIT Press)

Jupyter Notebook 20 5 Updated Mar 4, 2024

Code for ANTS book (Cohen, 2012, MIT Press)

MATLAB 217 83 Updated Mar 5, 2024

Analyzing Neural Time Series Data -- but I'm translating it to python

Jupyter Notebook 1 Updated Nov 8, 2023

Prediction of traffic patterns in bike sharing systems. Including dashboard for clustering analysis of stations in bike share networks based on traffic patterns.

Python 11 1 Updated Sep 22, 2022

the portable Python dataframe library

Python 6,201 682 Updated Nov 8, 2025

πŸš€πŸ§ πŸ’¬ Supercharged Custom Instructions for ChatGPT (non-coding) and ChatGPT Advanced Data Analysis (coding).

JavaScript 6,670 477 Updated Jan 17, 2024

🌈😊 Enjoy animating images into GIFs and MP4s in parallel!

Python 63 2 Updated Aug 2, 2024

Draw datasets from within Python notebooks.

JavaScript 1,571 144 Updated May 12, 2025

Quickly and accurately render even the largest data.

Python 3,473 378 Updated Oct 16, 2025

Tools to create, edit, and persist annotated regions for HoloViews

Python 26 2 Updated Mar 14, 2025

Microlog - A continuous profiler/logger for Python with microscopically small recordings, no overhead, and super-fast rendering using PyScript

Python 49 Updated Oct 31, 2025

Atmospheric CO2 Time Series

Python 3 Updated May 2, 2025

🎨 colormaps cooked for your palate

Python 31 1 Updated Oct 19, 2024

A reactive notebook for Python β€” run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.

Python 17,015 770 Updated Nov 8, 2025

Neuronal signature of spatial decision-making during navigation by freely moving rats by using calcium imaging

Jupyter Notebook 3 1 Updated Oct 13, 2022

A repository of neural manifold techniques described and compared in "Neural manifold analysis of brain circuit dynamics in health and disease"

Jupyter Notebook 30 7 Updated Oct 6, 2023

COMPASS Pathways two-dimensional model of linguistic sentiment

Python 8 1 Updated May 25, 2023

A list of all public EEG-datasets

2,767 609 Updated Oct 17, 2025

Covid Epidemic Simulator

JavaScript 9 2 Updated Dec 21, 2020
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