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Segment Anything Model for Medical Image Segmentation: Open-Source Project Summary
Automated machine learning can facilitate the early diagnosis and timely treatment of diabetic retinopathy. Following the 1st Diabetic Retinopathy: Segmentation and Grading Challenge held with ISBI…
Label Studio is a multi-type data labeling and annotation tool with standardized output format
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
Automatic Multifaceted Matlab Package for Analysis of Ocular Images (AMPAO). To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711019301852
UNet based model that segment retina to 8 layers in OCT images
Matlab Robust Graphical Methods For Group Comparisons
A python package to read, analyse and visualize OCT and fundus data from various sources.
Retinal image processing with python and opencv
Library for reading OCT data from HEYEX/Spectralis (E2E, sdb)
Pytorch Implementation of retinal OCT Layer Segmentation (with trained models)
vessel segmentation, artery and vein, optic disc, vascular feature analysis
Starting codes for the 2022-05-26 DiRAC Cluster Challenge
Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.
White matter tractography clustering and more...
A client for accessing OpenNeuro datasets, written in Python.
Official repository for Spyder - The Scientific Python Development Environment
DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medi…
Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!
Uncertainty Toolbox: a Python toolbox for predictive uncertainty quantification, calibration, metrics, and visualization