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A Python toolkit for pathology image analysis algorithms.

Python 457 127 Updated Oct 27, 2025

A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression

HTML 212 57 Updated May 29, 2025

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

C++ 491 140 Updated Nov 6, 2025

BAM Statistics, Feature Counting and Annotation

C++ 151 12 Updated Oct 21, 2025

Pretty plots using pure base graphics in R

R 90 10 Updated Nov 11, 2024

Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R

R 12 2 Updated Dec 6, 2021

Tool for plotting sequencing data along genomic coordinates.

Python 321 13 Updated Jun 28, 2025

Git repo for CONIPHER tree building

R 24 6 Updated Mar 20, 2025

Automate browser based workflows with AI

Python 17,684 1,510 Updated Nov 13, 2025

The all-in-one Desktop & Docker AI application with built-in RAG, AI agents, No-code agent builder, MCP compatibility, and more.

JavaScript 51,004 5,387 Updated Nov 7, 2025

🖥️ Run AI Agent in your browser.

Python 15,174 2,627 Updated Aug 31, 2025

🌐 Make websites accessible for AI agents. Automate tasks online with ease.

Python 72,488 8,622 Updated Nov 13, 2025

一个用于在 macOS 上平滑你的鼠标滚动效果或单独设置滚动方向的小工具, 让你的滚轮爽如触控板 | A lightweight tool used to smooth scrolling and set scroll direction independently for your mouse on macOS

Swift 17,838 570 Updated Nov 9, 2025

Tools to build deep learning pipelines.

Python 110 31 Updated Nov 12, 2024

Multi-Language Backend Framework that unifies APIs, background jobs, workflows, and AI Agents into a single core primitive with built-in observability and state management.

TypeScript 10,103 801 Updated Nov 13, 2025

A fast, clean, responsive Hugo theme.

HTML 12,626 3,260 Updated Oct 26, 2025

Node.js JavaScript runtime ✨🐢🚀✨

JavaScript 114,272 33,756 Updated Nov 13, 2025

🚀 Awesome list of open source applications for macOS. https://t.me/s/opensourcemacosapps

46,227 2,428 Updated Sep 14, 2025

User-friendly AI Interface (Supports Ollama, OpenAI API, ...)

JavaScript 115,108 16,080 Updated Nov 13, 2025

Gene Expression Decomposition and Integration

HTML 19 Updated Feb 19, 2025

R package for querying the DrugBank database in batch locally

R 37 8 Updated Jul 30, 2021

Perform PCA on data with missing values in R

R 53 11 Updated Sep 25, 2023

Breeze: A web based drug sensitivity and resistance testing data analysis platform.

R 4 1 Updated Oct 24, 2025
R 7 1 Updated Nov 23, 2023

Various algorithms for analysing genomics data

Java 251 64 Updated Nov 13, 2025

CellNet, for cancer

R 10 3 Updated Jul 14, 2022
MATLAB 20 4 Updated Jun 24, 2025

Spark-TTS Inference Code

Python 10,692 1,143 Updated Apr 9, 2025
Jupyter Notebook 12 5 Updated Apr 17, 2025

Let your Claude able to think

TypeScript 16,439 1,943 Updated Nov 4, 2025
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