Python 3.8+ toolbox for submitting jobs to Slurm

A new high-resolution long-read metagenome assembler for even noisy reads

Extract methylation calls from long reads (ONT/ PacBio)

Quickly search, compare, and analyze genomic and metagenomic data sets.

An introduction to evaluating stuff with sourmash

Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

Filtering and trimming of long read sequencing data

MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.

PanTax: Strain-level metagenomic profiling using pangenome graphs

Web-based interface to the NMDC EDGE platform

WDL workflow for metagenomics

Taxonomy-guided multiple sequence alignment for difficult genes, including 12S and 16S mitochondrial rRNA.

Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.

lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters

A workflow and scripts for large-scale antiSMASH analyses

Extremely fast Query Engine for DataFrames, written in Rust

Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.

A collection of softwares to handle and model PacBio kinetic signal data and predict epigenetics modifications.

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Tandem repeat genotyping and visualization from PacBio HiFi data

Fast genome-wide functional annotation through orthology assignment

Graph Clustering Merger

motus - a tool for marker gene-based OTU (mOTU) profiling

Utilities to access and analyze harmonized databases of public DNAm arrays from GEO.

Analyzing sketching and sampling approaches for fast and accurate read classification

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily