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npg_seq_pipeline Public
Forked from wtsi-npg/npg_seq_pipelineProcessing and analysis of data coming from Illumina sequencing machines
Perl UpdatedNov 14, 2025 -
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npg_qc Public
Forked from wtsi-npg/npg_qcQC checks and metrics for Illumina NGS data
Perl UpdatedAug 12, 2025 -
samtools_container Public
Forked from wtsi-npg/samtools_containerScripts to create a docker container for samtools
Shell UpdatedJan 5, 2024 -
npg_seq_common Public
Forked from wtsi-npg/npg_seq_commonUtilities for handling NGS data
XML UpdatedMay 11, 2023 -
npg_irods Public
Forked from wtsi-npg/npg_irodsTools for managing HTS (BAM and CRAM) format files in iRODS.
Perl GNU General Public License v3.0 UpdatedJul 7, 2022 -
npg_conda Public
Forked from wtsi-npg/npg_condaNPG Conda recipes and tools
Shell UpdatedJun 15, 2021 -
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htslib Public
Forked from wtsi-npg/htslibC library for high-throughput sequencing data formats
C Other UpdatedNov 1, 2019 -
bambi Public
Forked from wtsi-npg/bambiA set of programs to manipulate SAM/BAM/CRAM files, using HTSLIB
C GNU Affero General Public License v3.0 UpdatedSep 19, 2019 -
npg_tracking Public
Forked from wtsi-npg/npg_trackingWTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking
Perl UpdatedSep 6, 2019 -
npg_seq_melt Public
Forked from wtsi-npg/npg_seq_meltOperations on processed sequencing data (merges, metadata updates for the archive, etc.)
Perl UpdatedMay 2, 2018 -
vcftools Public
Forked from vcftools/vcftoolsA set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
C++ GNU Lesser General Public License v3.0 UpdatedApr 19, 2018 -
npg_ml_warehouse Public
Forked from wtsi-npg/npg_ml_warehouseAnalysis results loader for the multi-lims warehouse, see ml_warehouse project for the warehouse details.
Perl UpdatedApr 13, 2018 -
ml_warehouse Public
Forked from wtsi-npg/ml_warehousePerl DBIx binding to a warehouse housing data from multiple LIM systems
Perl UpdatedApr 13, 2018 -
baton Public
Forked from wtsi-npg/batoniRODS client programs and API
C GNU General Public License v2.0 UpdatedJan 8, 2018 -
perl-irods-wrap Public
Forked from wtsi-npg/perl-irods-wrapPerl iRODS Client Wrapper Library
Perl UpdatedNov 30, 2017 -
pb_calibration Public
Forked from wtsi-npg/pb_calibrationFilter and calibration programs for Illumina BAM files
C UpdatedJun 15, 2017 -
perl-dnap-utilities Public
Forked from wtsi-npg/perl-dnap-utilitiesWTSI DNA Pipelines Perl Utility Library
Perl GNU General Public License v3.0 UpdatedMay 19, 2017 -
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biobambam Public
Forked from gt1/biobambamTools for bam file processing
C++ Other UpdatedMar 21, 2014 -
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git-yacontrib Public
Forked from mcast/git-yacontribAssortment of useful scripts
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crammer Public
Forked from vadimzalunin/crammerReference-based compression of SRA data
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