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Commits on May 6, 2021

• Add debug logging around series detection

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Commits on Apr 23, 2021

• Fix progress bar max value when there are multiple planes

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Commits on Mar 24, 2021

• Update expected layout version from 1 to 2

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• Remove N5 references

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• Add jzarr snapshot repo for tests

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Commits on Mar 23, 2021

• Use well row_index and column_index if available

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• Remove data.zarr from expected hierarchy

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Commits on Mar 16, 2021

• Update bioformats2raw to 0.3.0-SNAPSHOT

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Commits on Mar 15, 2021

• Add a test that uses a plate

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• Merge branch 'master' of github.com:glencoesoftware/raw2ometiff into hcs

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Commits on Mar 11, 2021

• Expect METADATA.ome.xml in data.zarr directory

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Commits on Jan 7, 2021

• Fix block reading so that all tests pass

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• Initial switch from n5-zarr to jzarr

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Commits on Dec 3, 2020

• Update plate acquisition handling

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Commits on Nov 25, 2020

• Support HCS datasets with no METADATA.ome.xml file

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Commits on Nov 19, 2020

• Initial HCS hierarchy support

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Commits on Nov 3, 2020

• First pass at basic refactoring

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Commits on Oct 15, 2020

• Merge branch 'resolution-tags' of github.com:melissalinkert/raw2ometiff-1 into resolution-tags

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• Add test case to ensure that XResolution and YResolution tags are populated

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Commits on Oct 13, 2020

• Temporarily disable open source artifactory

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Commits on Oct 12, 2020

• Populate XResolution and YResolution TIFF tags

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Commits on Jul 30, 2020

• Add --version option

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Commits on Jul 27, 2020

• Fix sample format tag to preserve floating point pixel type

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Commits on Jun 23, 2020

• Update n5, n5-zarr, and n5-blosc to match bioformats2raw

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Commits on Jun 9, 2020

• Add --quality option to set the compression quality

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Commits on May 20, 2020

• Check more pixel values and add tests for weird tile and image sizes

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Commits on May 19, 2020

• Fix output offset calculation in tile row copying

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Commits on May 13, 2020

• Pad tile height if needed

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Commits on May 4, 2020

• Fix channel indexing with --rgb flag

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Commits on May 3, 2020

• Fix IFD offsets for multi-series data

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Commits on May 1, 2020

• Check the value of the "bioformats2raw.layout" attribute

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Commits on Apr 29, 2020

• Assume N5 pixel data is always big endian

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• Fix compile error

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• Fix TiffData IFD indexfor series > 0

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• Add endian mismatch checks

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