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Commits on Jun 17, 2021

• mrxs: store tile position adjustment values as Plane.PositionX and Plane.PositionY

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Commits on Jun 10, 2021

• Allow 3DHISTECH data to be initialized from Slidedat.ini file

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Commits on May 6, 2021

• Add debug logging

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Commits on Apr 23, 2021

• mrxs: simplify compressed tile buffer length calculation

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Commits on Mar 24, 2021

• Update layout version number from 1 to 2

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• Merge branch 'master' of github.com:glencoesoftware/bioformats2raw into well-indexing

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• Add a few sparse plate tests

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Commits on Mar 22, 2021

• Remove "data.zarr" from output hierarchy by default.

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Commits on Mar 17, 2021

• Add "row_index" and "column_index" for each well

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Commits on Mar 11, 2021

• Move METADATA.ome.xml under data.zarr

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• Clarify --dimension-order parameter vs Zarr layout

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Commits on Mar 10, 2021

• Write dimension order to METADATA.ome.xml

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• Document dimension order changes

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• Change default dimension order to TCZYX

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Commits on Mar 4, 2021

• Retrieve OME-XML from ChannelSeparator, not base reader

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Commits on Mar 1, 2021

• Note added --series and removed --file_type options

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• Remove N5 references now that only Zarr is supported

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Commits on Feb 8, 2021

• Expand uint16 test case to better catch endianness issues

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• Fix endianness handling

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Commits on Jan 27, 2021

• Merge branch 'master' of github.com:glencoesoftware/bioformats2raw into hcs

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Commits on Jan 26, 2021

• Merge branch 'master' of github.com:glencoesoftware/bioformats2raw into hcs

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Commits on Dec 21, 2020

• Allow multiple series to be selected for conversion

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Commits on Dec 9, 2020

• Add a few notes on when to use --max_workers

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• Fix image path when there are multiple fields and a single plate acquisition

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Commits on Dec 8, 2020

• Add --log-level option to set the specific logging level

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Commits on Dec 4, 2020

• Update plate acquisition handling and associated test

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Commits on Nov 30, 2020

• Don't require Plate.Rows and Plate.Columns to be set

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Commits on Nov 24, 2020

• Update HCS layout to match current IDR datasets

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Commits on Nov 19, 2020

• Add single-series conversion test

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• Add --series option

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Commits on Nov 13, 2020

• Test HCS metadata

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• Add HCS conversion tests

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Commits on Nov 12, 2020

• Initial plate/well metadata population

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Commits on Nov 11, 2020

• Automatically use HCS spec group format if a plate is present

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Commits on Nov 9, 2020

• Merge branch 'master' of github.com:glencoesoftware/bioformats2raw into pixel-type-option

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