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will-moore

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Commits on Jul 13, 2021

• move ngff VERSION to one place

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  541c88e

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• Initial support for v0.3. Ignore z, c, t if size is 1

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  44422c8

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Commits on Nov 26, 2020

• Add 'polygons' command like 'masks'

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  5f6a3df

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• Use roi.id as the mask_value

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  cd3b7e4

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• Use 'omero:text' for property name

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Commits on Nov 18, 2020

• Export omero:shapeId and omero:roiId in new label properties

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  e907a8a

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Commits on Nov 12, 2020

• Add Plate to README

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  2967765

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Commits on Nov 11, 2020

• Add acquisitions:[] metadata to plate. Use acq ID in images

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Commits on Nov 5, 2020

• Fix 'plateAcquisitions' -> 'acquisitions' in plate.zattrs

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• Ensure row and column names are strings, not numbers

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Commits on Nov 3, 2020

• Write plate 'wells' e.g. path: '/0/A/1/'

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  2344048

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• Ignore potential ZeroDivisionError in print_status

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  edbf787

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• Update plate metadata: rows, columns, field_count

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  5360f53

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• Fields named with field index

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  5586646

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• Add 'well' list of images to each column group

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Commits on Oct 30, 2020

• Export plate.name

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  e64f426

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Commits on Oct 28, 2020

• Use image._closeRE()

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  4e2122c

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Commits on Oct 27, 2020

• Fix --cache_numpy usage in README

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  eda5524

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• Close rendering engine after image.getChannels()

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  ae705da

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Commits on Oct 26, 2020

• Remove ac_names = set()

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  75735de

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• Write plate metadata at the start. Update 'images' after each Well

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  3155d2e

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Commits on Oct 20, 2020

• Add omero metadata to Fields

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  330099f

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• Add multiresolutions for each Image, to size 96

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  4d7850d

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Commits on Jul 7, 2020

• Add mask export args to README

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Commits on Jun 24, 2020

• Add 'export' sub command

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  abef39d

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Commits on Jun 22, 2020

• Remove print statements

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  0a59bde

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• Export masks as 4D zarr

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  cbbfec4

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Commits on May 8, 2020

• Add --bf flag to README

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  2cea8f6

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• Add usage to README

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  a58dd66

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• Use rawpixelsstore to download by default

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