Analysis of 3D pathology samples using weakly supervised AI - Cell

Scalable Optical Flow-based Image Montaging and Alignment

Collect, aggregate, and visualize a data ecosystem's metadata

Prefect is a workflow orchestration framework for building resilient data pipelines in Python.

Deploy any AI model, agent, database, RAG, and pipeline locally or remotely in minutes

A beautiful, simple, clean, and responsive Jekyll theme for academics

Github Pages template based upon HTML and Markdown for personal, portfolio-based websites.

An easy-to-use, flexible website template for labs. https://doi.org/10.5281/zenodo.17228741

Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

Various tools for creating and manipulating Zarr V3 data with the zarrs Rust crate

Segment Anything for Histopathology

This repository contains an early look at the CL API documentation for the Cortical Labs CL1 platform.

SOPs of the HCPh project

A Python interface to k-Wave GPU accelerated binaries

A beautiful resume/cover letter LaTeX template pair that are extraordinarily easy to use.

Reproducible and Programmatic Human Neuroimaging Visualisations

Monty is a sensorimotor learning framework based on the thousand brains theory of the neocortex.

Shape processing in Python.

Matlab package for circle packing

[MICCAI 2024] Weakly Supervised Learning of Cortical Surface Reconstruction from Segmentations

PAthological QUpath Obsession - QuPath and Python conversations

BrainAGE Estimation

Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping

Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF