A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.

Lark is a parsing toolkit for Python, built with a focus on ergonomics, performance and modularity.

Python package to access a cacophony of neuro-imaging file formats

Matplotlib style sheets to nicely format figures for scientific papers, thesis and presentations while keeping them fully editable in Adobe Illustrator.

Definition and DDLs for the OMOP Common Data Model (CDM)

A web API and UI for the NeuroLang library.

Creation of new CIFTI files and the reading and manipulating of existing ones

A library for Multilingual Unsupervised or Supervised word Embeddings

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

A distributed task scheduler for Dask

Groupwise Structural Parcellation of the Whole Cortex: A Logistic Random Effects Model Based Approach

Modeling and statistical inference on fMRI data in Python

Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis

A Cython wrapper to BLAS and LAPACK

A Cython wrapper to BLAS and LAPACK

SciPy library main repository

3D visualization of scientific data in Python

The most widely used Python to C compiler

The fundamental package for scientific computing with Python.

scikit-learn: machine learning in Python

Simple and small program allowing to set the environment of any executable.

Vim - the text editor - for Mac OS X

This software implements the clustering method described in D. Wassermann, L. Bloy, E. Kanterakis, R. Verma, and R. Deriche. Unsupervised white matter fiber clustering and tract probability map gen…

Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

Neuroimaging in python

Neuroimaging in Python FMRI analysis package