This repository hosts a minimal version of a Python API for BPNet.

ManimML is a project focused on providing animations and visualizations of common machine learning concepts with the Manim Community Library.

Latex code for making neural networks diagrams

All the handwritten notes 📝 and source code files 🖥️ used in my YouTube Videos on Machine Learning & Simulation (https://www.youtube.com/channel/UCh0P7KwJhuQ4vrzc3IRuw4Q)

Introduction to Machine Learning Systems

A package for the sparse identification of nonlinear dynamical systems from data

From-scratch diffusion model implemented in PyTorch.

Official repository for the Boltz biomolecular interaction models

User friendly and accurate binder design pipeline

AlphaFold 3 inference pipeline.

Singularity (apptainer) container to run evo2

Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning

Code for running RFdiffusion

Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and relies on a tailored scalable transformer architecture.

Genome modeling and design across all domains of life

Code Repository for Liquid Time-Constant Networks (LTCs)

Make Zotero effective for us LaTeX holdouts

A comprehensive macromolecular library

Extract data quickly from Juicebox via straw

Scripts to analyze chromosome molecular dynamics simulations

Getting started with soccer analytics

AlphaFold Meets Flow Matching for Generating Protein Ensembles

NeoForceSceme, an extention of the original ForceScheme with performance improvements using Numba and CUDA

This is a repo used for CTBP tech talks