Kernel Density Estimation in Python

Statistical package in Python based on Pandas

Parameterizing neural power spectra into periodic & aperiodic components.

Python code implementing the ZETA-test

Explorations of survival analysis in Python

Plugins for Phy2

NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB t…

Neuropixels trajectory explorer with the Allen CCF mouse atlas

Histology processing

Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days

A complete computer science study plan to become a software engineer.

Browser-based NWB visualization and DANDI exploration

demonstration of using rasterization in matplotlib and the scour library to simplify working with spike raster plots

Shareable, interactive scientific figures in the cloud

A Python-based module for creating flexible and robust spike sorting pipelines.

Spike sorting pipeline for generating consensus units from neuropixel recordings.

cortex lab code for electrophysiology

Utilities for managing Neuropixel datasets and Kilosort results

Neuropixels data analysis pipeline

Modules for processing extracellular electrophysiology data from Neuropixels probes

Experimental code to read/write NumPy .NPY files in MATLAB

A Matlab GUI for rendering 3D mouse brain structures

An open-source circuit for microwire tetrode gold plating