A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

Microsoft PowerToys is a collection of utilities that help you customize Windows and streamline everyday tasks

Useful Utilities for Statistics and Visualization.

ggtrendline: An R Package for Adding Trendline and Confidence Interval to 'ggplot'.

Bayesian Change-Point Detection and Time Series Decomposition

A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.

Biomni: a general-purpose biomedical AI agent

The resources of LucaOne, including: the model code, training scripts, embedding inference code, and trained checkpoints.

Gradient boosted models

Online version of Bischl, B., Sonabend, R., Kotthoff, L., & Lang, M. (Eds.). (2024). "Applied Machine Learning Using mlr3 in R". CRC Press.

This is the standalone version of the EviAnn pipeline

Materials for teaching R and tidyverse

slides and codes for learning R4DS

Snakemake pipeline for running HUMAnN3.6

HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

A package to annotate protein sequences

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis

ChatReviewer: 使用ChatGPT分析论文优缺点，提出改进建议

Lineage-specific microbial protein prediction facilitates exploration of protein ecology within the human gut.

RNAseq analysis notes from Ming Tang

Network analysis for multi-omics

R package for performing 2-sample MR using IEU OpenGWAS database

程序员在家做饭方法指南。Programmer's guide about how to cook at home (Simplified Chinese only).

BEiT-based model Pre-training on Histopathological image

Genome modeling and design across all domains of life