An open-source handbook of applied guidance and tools for sustainable software development and maintenance.

Mondo Disease Ontology

Manubot Repo for Package Manager Review Paper

A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.

Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scientists.

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

DEPRECATED - the old Adage web app. Replaced by: https://github.com/greenelab/py3-adage-backend and https://github.com/greenelab/adage-frontend

A python implementation of Stability NMF

Cognoma Core API

Putting machine learning in the hands of cancer biologists

Materials for GCB535 at Penn.

DDD Barnraising Project: Genetic Overlay

Scientific and statistical computing in JavaScript.

Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four

Source code associated with "Leveraging global gene expression patterns to predict expression of unmeasured genes"

R package for normalizing RNA-seq data to make them comparable to microarray data.

Scripts and data for re-creating TDM results.

Identify possibly duplicate samples in a list of ExpressionSets

SNP abundance correlates with network degree

CAFA-sp-targets

Raven is the legacy Python client for Sentry (getsentry.com) — replaced by sentry-python

Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Modular search for Django