In the subdirectories here you will find:

The JACKS python package (please see jacks/README.txt for usage instructions)

Scripts and README files with location of results and data for the JACKS 2018 paper.

Trained values for JACKS's gRNA efficacies for the Avana, GeCKOv2, Yusa 1.0, TKOv1 and Whiteahead libraries as generated for the 2018 JACKS paper. These can be used with run_JACKS.py to evaluate screens on these libraries without re-running the full analysis.