List of ngrok/Cloudflare Tunnel alternatives and other tunneling software and services. Focus on self-hosting.

Blazing-Fast Bioinformatic Operations on Python DataFrames

A collection of unexpected challenges and learnings with nextflow and nf-core.

Container class to represent genomic locations and support genomic analysis

WebAssembly powered code blocks and exercises for both the R and Python languages in Quarto documents

「漢字標準格式」印刷品般的漢字排版框架 Han.css: the CSS typography framework optimised for Hanzi.

WebAssembly modules for genomics

Integrative Composable Visualization Framework for ggplot2

Learning the Sequence Alignment/Map format

Work with bioinformatic files using Arrow, Polars, and/or DuckDB

Deep inspection of Python objects

A terminal spreadsheet multitool for discovering and arranging data

Modern Jupyter server based on FastAPI

Immuological gene typing and annotation for genome assembly

Interactive bioinformatics tutorials

A Rust library and command line tool for working with genomic ranges and their data.

More efficient tidyverse code, using polars in the background

T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.

PyPy is a very fast and compliant implementation of the Python language.

🔬 Path to a free self-taught education in Bioinformatics!

🐍 DRAGEN Tumor/Normal workflow post-processing

Tumor Mutational Burden

⚙️ Supercharge your shortcuts

Read-based phasing of genomic variants, also called haplotype assembly

Fast HLA type inference from whole-genome data

The SQL IDE for Your Terminal.

nextNEOpi: a comprehensive pipeline for computational neoantigen prediction