A library for QC report based on MultiQC framework

The codebase of the OpenMS project

the SwifT Exact LocaL AligneR

Standard format development for control of quality

pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.

HUPO-PSI mass spectrometry CV

Generates Python Extension modules from Cythons PXD files

An tandem mass spectrometry (MS/MS) sequence database search tool.

OpenMS Documentation.

MAximum Parsimonious Likelihood Estimation in C/C++

Implementations of SIMD instruction sets for systems which don't natively support them.

❗ This is a read-only mirror of the CRAN R package repository. ontologyIndex — Reading Ontologies into R

The OpenMS contrib libraries

SQLiteC++ (SQLiteCpp) is a smart and easy to use C++ SQLite3 wrapper.

A heap memory profiler for Linux

A Webserver for PTXQC using R-Shiny

The Ontology for Biomedical Investigations

Command Line Process Profiling Tool by David Catt

MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.

A C# solution with projects containing utiliy classes that are used e.g. in MaxQuant and Perseus

Tutorials for bioinformatics.

Some hopefully useful tools for mass spectrometry applied to proteomics

A C++14 cheat-sheet on lvalues, rvalues, xvalues, and more

Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)

Benchmark dataset for PeptideMapper paper.