Version 0.5.1

bugfixes:

- paired_end_read_merger don't crash on nested reads
  due to quality issue (heavy quality-timming or aligner soft-clipping)
  one read can be entirely fit within it's paired mate

- aln2basecnt don't crash on CDC IRMA's bam with N cigar operators
  SAMv1: For mRNA-to-genome alignment, an N operation represents an intron.
  For other types of alignments, the interpretation of N is not defined.

Version 0.5.1

features:
- coverage_depth_qc
  directly supports TSV generated by `samtools depth`
  and CDC's IRMA

minor qualitiy-of-life improvement:
- paired_end_read_merger
  better logging and progress bars
- documentation update

Version 0.5.0

New features:
- paired_end_read_merger
  merge aligned paired end reads into full amplicon

- coverage_depth_qc
  gives the percentage of the genome that is covered at least at the specified coverage depth

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Version 0.4.0

 - frameshift_deletions_checks: --chain as alternative to running mafft
 - packaging modernized

Authors links in README.rst

- ORCID and GitHub links /w icons

A bit more explicit about array base

Improved comments

Version 0.3.6

updates in frameshift_deletions_checks

 - better english messages generation
 - use actual fractions instead of %