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variant-interpretation Public
Forked from talkowski-lab/variant-interpretationWDL UpdatedJun 3, 2025 -
TAG-public Public
Forked from broadinstitute/TAG-publicOfficial workflows published by the Broad Institute's Genomics Platform Translation Analysis Group (TAG)
WDL UpdatedMar 10, 2024 -
warp Public
Forked from broadinstitute/warpWDL Analysis Research Pipelines
WDL BSD 3-Clause "New" or "Revised" License UpdatedDec 8, 2023 -
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gatk-linked-reads Public
Forked from broadinstitute/gatkOfficial code repository for GATK versions 4 and up
Java BSD 3-Clause "New" or "Revised" License UpdatedJul 30, 2021 -
mocha Public
Forked from freeseek/mochaMOsaic CHromosomal Alterations (MoChA) caller
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quartetibdanalysis Public
Tools for analyzing IBD state and copy number variation in quartet sequencing experiments
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htsjdk Public
Forked from samtools/htsjdkA Java API for high-throughput sequencing data (HTS) formats.
Java UpdatedOct 7, 2019 -
shapeit4 Public
Forked from odelaneau/shapeit4Segmented HAPlotype Estimation and Imputation Tool
C++ MIT License UpdatedMar 25, 2019 -
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cloudbreak Public
The Cloudbreak Hadoop-based Genomic Structural Variation Caller
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A tool to test the enrichment of genomic features by permutations
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svfactorie Public
Detect genomic structural variations using conditional random fields in the Factorie framework
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sv-annotate Public
A small pipeline to annotate and filter candidate structural variation calls
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jclouds Public
Forked from jclouds/legacy-jcloudsjclouds is an open source library that helps you get started in the cloud and reuse your java development skills. Our api allows you to freedom to use portable abstractions or cloud-specific featur…
Java UpdatedApr 29, 2013
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