📊 Circular and Rectangular Manhattan Plot

Data Simulation for Life Science and Breeding

Multi-language suite for high-performance solvers of differential equations and scientific machine learning (SciML) components. Ordinary differential equations (ODEs), stochastic differential equat…

Perform GWAS using the FarmCPU model.

Linking GWAS data to analytical tools in R

A pure Julia port of R's GENLIB genetics and genealogical library

A Julia package for multivariate statistics and data analysis (e.g. dimension reduction)

Powerful statistics for VCF files

Scripts to convert between file formats for various analyses

Implementation of the 1D Savitzky-Golay filter in JuliaLang

The perfect sidekick to your scientific inquiries

Meta-package for data analysis in Julia, modeled after the R tidyverse.

Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself

Reading, querying and writing GWAS summary data in VCF format

Tools to work with variant call format files

Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

Datastructures and algorithms for working with genetic variation

Read and write VCF and BCF files

Obsidian Plugin to execute code in a note.

Generalized linear models in Julia

Symbolic expressions, rewriting and simplification

Computational geometry in Julia

Genome Association Predict Integrate Tools

Code to compute the XP-CLR statistic to infer natural selection

Genome-wide association studies (GWAS) for ordered categorical phenotypes

TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes