This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.

statistics of nanopore sequencing in PuckerLab

Long Read Genomics course materials

Instructions for all major step in a plant genome sequencing project

Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.

This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies.

Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation, and repelling herbivores.This repository provides addition…

collection of mini tools for the BioinfToolServer

coverage plot script for analysis of re-sequencing data

Co-Expression analysis tool

Python script to map functional annotation to a phylogenetic tree

automatic annotation of bHLH gene family in plants

scripts and data sets associated with Data Literacy in Plant Sciences course

Collection of scripts associated with co-expression and phylogenetic analysis approach

Materials of the course WBIO-A-08 Plant Bioinformatics

MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional background to the #MYB_Monday tweets

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific repositories.

analyze RNA-seq data with BLASTn

Homepage of Boas Pucker listing publications and professional activities

collection of figures to display on github

Python introduction for life scientists

Python for Life Scientists at the University of Bonn

Collection of materials belonging to the Applied Plant Transcriptomics course

Neighborhood-Aware Variant Impact Predictor

scripts associated with the Victoria cruziana study

scripts associated with the Theobroma cacao genome sequencing project

variant calling and processing

script to assess the quality of RNAseq data sets