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A cross-platform proteomics data analysis suite
ggNetView is an R package for network analysis and visualization. It provides flexible and publication-ready tools for exploring complex biological and ecological networks.
RA Synovial Single-cell Multimodal Cell Atlas
Generate high quality, publication ready visualizations for single cell transcriptomics data.
A Model Context Protocol (MCP) server that provides comprehensive access to the NCBI Datasets API
To discover gene expression datasets by disease/condition and access comprehensive NCBI databases
Toolkit for large-scale whole-slide image processing.
Open source tools for computational pathology - Nature BME
Pantheon-CLI, our first release of PantheonOS, the AgentOS that re-imagines Science
The official codes for "M^3Builder: A Multi-Agent System for Automated Machine Learning in Medical Imaging"
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
🐝 Awesome R and Python packages offering extended UI or server components for the web framework Shiny
⚡ Hugo Blox: Markdown sites in minutes. Academic/resume/lab/portfolio for AI researchers & startups. Premium templates. Deploy to GitHub Pages now in 1-click 👇
前端开发常用文档/网站地址、样式/js方法封装库、项目模板。提供Chrome拓展程序
Full stack, modern web application template. Using FastAPI, React, SQLModel, PostgreSQL, Docker, GitHub Actions, automatic HTTPS and more.
A powerful coding agent toolkit providing semantic retrieval and editing capabilities (MCP server & other integrations)
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
Graph and network visualization using tabular data in R
Tool for robust segmentation of >100 important anatomical structures in CT and MR images
Test data to be used for automated testing with the nf-core pipelines
MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases
Jupyter notebooks for learning how to use SimpleITK