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parabricks-nextflow Public
Forked from clara-parabricks-workflows/parabricks-nextflowAccelerated genomics workflows in NextFlow
Nextflow Apache License 2.0 UpdatedApr 17, 2025 -
MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
JavaScript GNU General Public License v3.0 UpdatedApr 14, 2025 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedMar 14, 2025 -
nf-tower Public
Forked from seqeralabs/nf-towerNextflow Tower system
Groovy Mozilla Public License 2.0 UpdatedJan 30, 2025 -
igv.js Public
Forked from igvteam/igv.jsEmbeddable genomic visualization component based on the Integrative Genomics Viewer
JavaScript MIT License UpdatedJul 12, 2024 -
igv-webapp Public
Forked from igvteam/igv-webappIGV Web App
JavaScript MIT License UpdatedJul 11, 2024 -
deepvariant Public
Forked from google/deepvariantDeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 6, 2023 -
amazon-ebs-autoscale Public
Forked from awslabs/amazon-ebs-autoscaleDon't run out of disk space on your EC2 instance when generating or working with large files. Automatically add EBS volumes to a filesystem mount point in response to disk utilization.
Shell MIT License UpdatedSep 15, 2022 -
DRAGMAP Public
Forked from Illumina/DRAGMAPDRAGEN open-source mapper
C++ Other UpdatedMay 30, 2022 -
hts-specs Public
Forked from samtools/hts-specsSpecifications of SAM/BAM and related high-throughput sequencing file formats
TeX UpdatedMay 24, 2022 -
ExpansionHunter Public
Forked from Illumina/ExpansionHunterA tool for estimating repeat sizes
C++ Apache License 2.0 UpdatedFeb 2, 2022 -
genome-stratifications Public
Forked from genome-in-a-bottle/genome-stratificationsStratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium. These files can be used as standard resource of BED files …
HTML UpdatedNov 18, 2021 -
open-data-registry Public
Forked from awslabs/open-data-registryA registry of publicly available datasets on AWS
Python Apache License 2.0 UpdatedOct 28, 2020 -
biolink-api-to-be-deleted Public
Forked from monarch-initiative/biolink-apiAPI for linked biological knowledge
Python UpdatedOct 11, 2017 -
htslib Public
Forked from samtools/htslibC library for high-throughput sequencing data formats
C Other UpdatedApr 8, 2017 -
hdf2tab Public
convert from HDF5 matrix format to txt/tab (tsv) matrix format
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tab2hdf Public
convert from txt/tab (tsv) matrix format to HDF5 matrix format
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PyVCF Public
Forked from jamescasbon/PyVCFA Variant Call Format reader for Python.
Python Other UpdatedMar 24, 2016 -
signal-element-stack Public
stack signal (bed/bedGraph/wig) around fixed anchor (element)
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vcf2fasta Public
reference fasta to diploid fasta via SNPs in VCF
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c-world-encode Public
h5 helper scripts for encode/dekkerlab hi-c data
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