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  • Dana-Farber Cancer Institute / Harvard medical school
  • Boston
  • X @blain_alex

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Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

Jupyter Notebook 397 67 Updated Aug 22, 2025

cancer-module-cnv

JavaScript 2 2 Updated Oct 13, 2017

Code behind medium blog

HTML 125 36 Updated Dec 13, 2018

R for data science: a book

R 4,962 4,385 Updated Nov 14, 2025

Accelerating ggplot2

R 945 110 Updated Sep 15, 2025

Read-based phasing of genomic variants, also called haplotype assembly

Python 401 48 Updated Dec 31, 2025

Dataflow Programming for Machine Learning in R

R 148 28 Updated Jan 4, 2026

resources for learning bioinformatics

1,326 235 Updated Jan 8, 2025

Scripts written for my Bioinformatics-along on YouTube: https://www.youtube.com/playlist?list=PLzfP3sCXUnxEu5S9oXni1zmc1sjYmT1L9

R 77 31 Updated Dec 8, 2021

Quality Control Analysis for High Throughput Screening

Jupyter Notebook 2 Updated Mar 1, 2021