vignette: https://amashadihossein.github.io/daapr/

https://amashadihossein.github.io/dpbuild/

Setting R Development Environment with VScode, Dev Containers, and Docker

https://amashadihossein.github.io/dpi/

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Clone me to create your Manubot manuscript

Parsing tools for GTF (gene transfer format) files

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

R package to visualize scRNA sequencing data.

R package for performing 2-sample MR using MR-Base database

An R package to manipulate and explore UK Biobank data

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

A list of deep learning implementations in biology

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank

My personal Shiny server

extensions for shinydashboard

Machine Learning Experiments and Work

Python Library for Model Interpretation

R package, using vis.js library for network visualization

iml: interpretable machine learning R package

Script to calculate polygenic risk scores in a genotyped sample using GWAS summary statistics from a disease/trait.