ChIP-seq analysis notes from Ming Tang

A curated and summarized list of bioinformatics bench-marking papers and resources.

A curated list of awesome Bioinformatics libraries and software.

Statistics-driven benchmarking library for Rust

Benchmarks for classification of genomic sequences

Examples of single-cell genomic analysis accelerated with RAPIDS

Visualise Clusterings at Different Resolutions

My PhD thesis - "Tools and techniques for single-cell RNA sequencing data"

Annotated data.

Graph-regularized Tucker tensor decomposition

LaTeX.css is a CSS library that makes your website look like a LaTeX document

This is a repo with links to everything you'd ever want to learn about data engineering

A framework for benchmarking clustering algorithms

Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)

Hopfield Networks is All You Need

Examples of using deep learning in Bioinformatics

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

Supporting code for the paper "Evidence that coronavirus superspreading is fat-tailed"

Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences

Bioinformatics Workbook repository

Repository for data science book

Colorize R output in terminal emulators

Application for making ENCODE Blacklists

Embeddable genomic visualization component based on the Integrative Genomics Viewer