Starred repositories
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
A napari plugin for zarr backed OME-NGFF images
Transformer-based cell tracking for live-cell microscopy
Development environments for coding agents. Enable multiple agents to work safely and independently with your preferred stack.
Zarr core protocol for storage and retrieval of N-dimensional typed arrays
Official PyTorch Implementation of "SiT: Exploring Flow and Diffusion-based Generative Models with Scalable Interpolant Transformers"
A CLI tool for analyzing Claude Code/Codex CLI usage from local JSONL files.
Production-ready Claude subagents collection with 100+ specialized AI agents for full-stack development, DevOps, data science, and business operations.
A curated list of awesome commands, files, and workflows for Claude Code
Guide to python package development for scientists
The missing star history graph of GitHub repos - https://star-history.com
A collaboration friendly studio for NeRFs
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
A napari reader and writer for the graph exchange file format (geff)
Reference implementation of the Graph Exchange File Format
Various tools for creating and manipulating Zarr V3 data with the zarrs Rust crate
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
PyTorch code and models for V-JEPA self-supervised learning from video.
The Bluesky Social application for Web, iOS, and Android
A concise but complete full-attention transformer with a set of promising experimental features from various papers
napari: a fast, interactive, multi-dimensional image viewer for python
WebGL-based viewer for volumetric data