sunburst plots for taxonomy - working to update Krona

Decorator-first Python scheduler — cron/interval/at jobs with simple persistence and built-in run history.

A security auditor for Tailscale configurations. Scans your tailnet for misconfigurations, overly permissive access controls, and security best practice violations.

Basic types and functions for pairwise alignment.

Extremely Fast Compression algorithm

A small, auxiliary index to massively improve parallel fastq parsing

Simple, minimal-dependency HTTP client.

An open source python library for automated feature engineering

Rust library providing cache-efficient, stack-allocated string types

Proc macro to inject docs from external files into Rust code

Gzip Decompression and Random Access for Modern Multi-Core Machines

Breathe fresh life into your bricked Nest, now with 100% less evil!

Alignment-based filtering CLI tool

Grep for FASTQ files

An efficient way to filter duplicate lines from input, à la uniq.

A collection of minimizer-based sampling algorithms.

Implementation of the u-index

A new bootable USB solution.

Multi-threaded Compression

The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information required to support data sharing and integration for foodborne …

An efficient unique-line counter (25x over `sort | uniq -c`)

🧠 Cognitive load is what matters

Command-line sampling profiler for macOS, Linux, and Windows

LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash

Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog

Depth-weighted De-Mixing

Pathfinding library for rust

Extremely fast and accurate Nanopore demultiplexing

WhisperX: Automatic Speech Recognition with Word-level Timestamps (& Diarization)