Releases · bcgsc/arcs · GitHub

06 Nov 17:51

lcoombe

ARCS v1.2.8 Latest

Latest

Release version 1.2.8
Add optional parameter 'prefix' to arcs-make - if specified, soft-links the final scaffolds fasta file to a file with this prefix
Update documentation

Assets 3

25 Mar 22:06

lcoombe

ARCS v1.2.7

Release version 1.2.7
Update arcs version message
Update e-mails, copyright years

Assets 3

06 Dec 18:46

lcoombe

ARCS v1.2.6

Release version 1.2.6
Bugfix for arks-tigmint and arcs-tigmint rules in arcs-make
Update documentation

Assets 3

06 Jan 17:14

lcoombe

ARCS v1.2.5

Release version 1.2.5
Update arcs-make to allow uncompressed long read files as input

Assets 3

06 Jun 23:04

lcoombe

ARCS v1.2.4

Release version 1.2.4
Remove integrated btllib, make it a dependency

Assets 3

11 Feb 23:08

lcoombe

ARCS v1.2.3

Release version 1.2.3
Add arcs-make, makeTSVfile.py to 'bin' folder
Add -I option to minimap2 for arcs-long target to avoid
splitting index if genome size large
- Set to 50G by default, can be changed using minimap2_index_size
Update documentation
Bugfixes

Assets 3

31 May 22:34

lcoombe

ARCS v1.2.2

Release version 1.2.2
long-to-linked-pe script ported to C++
pseudo-linked reads are streamed directly from long-to-linked-pe to arcs --arks in ARKS-long mode
Bugfixes

Assets 3

29 Jan 23:07

theottlo

ARCS v1.2.1

Release version 1.2.1
Added arcs-make to tar.gz

Assets 3

21 Jan 20:10

theottlo

ARCS v1.2.0

Release version 1.2.0
Users can now also use long reads to scaffold draft assemblies
Added --arcs-long and --arks-long modes to arcs-make so users can run the ARCS+LINKS pipeline using long reads as input
- long-to-linked-pe segments and assigns barcodes to the long
  reads prior to running ARCS and LINKS

Assets 3

09 Jan 00:19

lcoombe

ARCS v1.1.1

Release version 1.1.1
Users can now set the --pair parameter to output a tsv file with the number of links supporting each orientation (hh, ht, th, tt) of each scaffold pair
Bug fix to binomial test

Assets 3