Stars
Integrate the opencode AI assistant with Neovim — streamline editor-aware research, reviews, and requests.
Homology-based reference genome acquisition and comparison
Materials for the LongTREC summer school 2025.
This is the standalone version of the EviAnn pipeline
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
Python package for processing deep learning models
Data Science Operations (dso) command line tool
Utility scripts of various purposes in the framework of data analysis and bioinformatics
fastest GTF/GFF-to-BED converter chilling around
Forking the ERGA-consortium github
Repository for the first week of the 20th edition of the advanced couse in Phylogenomics and Population Genomics (ppgcourse) of the University of Barcelona (UB)
A fully featured MinKNOW simulator for testing read until experiments.
PyPaperBot is a Python tool for downloading scientific papers using Google Scholar, Crossref, SciHub, and SciDB.
Dynamic, adaptive sampling during nanopore sequencing
GENE-SWitCH project RNA-Seq analysis pipeline
Search and explore genomic metadata, Earth BioGenome Project progress and assembly features
A neovim plugin for interactively running code with the jupyter kernel. Fork of magma-nvim with improvements in image rendering, performance, and more
Nextflow pipeline for genome annotation of protein-coding genes
Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences