Library for studying Cayley graphs and Schreier coset graphs

A NumPy port of the foldseek code for encoding protein structures to 3di.

Official repository for the Boltz biomolecular interaction models

Mining antibody functionality via AI-guided structural landscape profiling

AlphaFold 3 inference pipeline.

Deriva Protein Database Project

Protein CA-based Solvent Accessibilities (PCASA)

📖 mmCIF support for hybrid/integrative models

Transmembrane proteins predicted through Language Model embeddings

ColabFold on your local PC

Validation software for integrative models deposited to PDB

A generative model for programmable protein design

QBI Hackathon

Lo-Hi Splitter for Modern Splits of Molecular Datasets

Compressing protein structures effectively with torsion angles

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

Accurate prediction of protein pKa with representation learning

Validation software for integrative models deposited to PDB

Makarich documentation

AlphaFold2 non-docker setup

A collection of scripts that were used to process sequencing data for Adineta vaga individuals L1-L11 analyzed in the article https://www.nature.com/articles/s41467-020-19614-y.

Semiempirical Extended Tight-Binding Program Package