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Software for Quantifying Interspersed Repeat Expression

Python 63 34 Updated Jun 20, 2022

A package for quantifying transposable elements at a locus level for RNAseq datasets.

Python 29 8 Updated Feb 3, 2025

Materials from my Strange Loop 2014 workshop, Let's Build a Shell!

C 660 88 Updated Jul 28, 2021

A proof of concept of RNAseq pipeline

Nextflow 79 112 Updated Oct 21, 2025

My 'Python for Data Analytics' course on YouTube

Jupyter Notebook 571 295 Updated Oct 29, 2025

A package for including transposable elements in differential enrichment analysis of sequencing datasets.

Python 267 30 Updated Sep 18, 2025