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A fully open source biomolecular structure prediction model based on AlphaFold3
Benchmarking code accompanying the release of `bioemu`
Official repository for the ProteinDJ protein design pipeline
Modelling protein conformational landscape with Alphafold
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
Official implementation of "Learning the language of protein structures"
A trainable PyTorch reproduction of AlphaFold 3.
Official PyTorch Implementation of "Boost-and-Skip: A Simple Guidance-Free Diffusion for Minority Generation" (ICML 2025)
Python bindings for the TM-align algorithm and code for protein structure comparison developed by Zhang et al.
Official PyTorch Implementation of "Don't Play Favorites: Minority Guidance for Diffusion Models" (ICLR 2024)
A general framework for inference-time scaling and steering of diffusion models with arbitrary rewards.
Implementation of Particle Guidance: non-I.I.D. Diverse Sampling with Diffusion Models
ezkl is an engine for doing inference for deep learning models and other computational graphs in a zk-snark (ZKML). Use it from Python, Javascript, or the command line.
🚀🤖 Crawl4AI: Open-source LLM Friendly Web Crawler & Scraper. Don't be shy, join here: https://discord.gg/jP8KfhDhyN
Versatile computational pipeline for processing protein structure data for deep learning applications.
X-EISD – Extended Experimental Inferential Structure Determination
Learning the language of protein-protein interactions
The Family of Diffusion Protein Language Models (DPLM)
Physics Informed Deep Learning: Data-driven Solutions and Discovery of Nonlinear Partial Differential Equations
Structural Python (Back) Calculator Interface for PDBs
Open source alternative to Gemini Deep Research. Generate reports with AI based on search results.
Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
Analyze small-angle X-ray scattering curves for disordered proteins.