Utility for merging RNA-seq expression counts files from St. Jude Cloud.

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You can install stjudecloud-merge-counts using the Python Package Index (PyPI).

pip install stjudecloud-merge-counts

If you are interested in contributing to the code, please first review our CONTRIBUTING.md document.

To bootstrap a development environment, please use the following commands.

# Clone the repository
git clone [email protected]:stjudecloud/merge-counts.git
cd merge-counts

# Install the project using poetry
poetry install

merge-counts provides a (currently patchy) set of tests — both unit and end-to-end.

py.test

Contributions, issues and feature requests are welcome!
Feel free to check issues page. You can also take a look at the contributing guide.

This project is licensed under the MIT License—see the LICENSE.md file for details.

Copyright © 2020 St. Jude Cloud Team.