A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessible.

Build System, Syntax Highlighting and Snippets for Snakemake

Ergonomic keyboard layout generator

BiBiGrid is a tool for an easy cluster setup inside a cloud environment.

Alignment-free phylogenomic splits

Genome assembly evaluation tool

Template for ELIXIR Lessons

A web application for finding and comparing bioinformatics training materials on GitHub and GitLab

A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.

renv: Project environments for R.

Minimum Information about any (X) Sequence” (MIxS) specification

ENA metagenome upload

Multi-Repository Data Submission using ISA-JSON

The Metagenomics-Toolkit is a scalable, data agnostic workflow that automates the analysis of short and long metagenomic reads obtained from Illumina or Oxford Nanopore Technology devices, respecti…

Overview of our data for microbial genomic benchmarking

Technically-oriented PDF Collection (Papers, Specs, Decks, Manuals, etc)

A mini course on biological data analysis

Python tool for converting files and office documents to Markdown.

ELIXIR Research Data Management Toolkit - Find the answers to your research data management questions here.

Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)

A program for the Maximum-likelihood analysis of population genomic data.

Snakemake pipeline for Popoolation and Popoolation2

Github Pages template based upon HTML and Markdown for personal, portfolio-based websites.

Package management made easy

MIRA sequence assembler

A single molecule sequence assembler for genomes large and small.

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation