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Prodigal Public
Forked from hyattpd/ProdigalProdigal Gene Prediction Software
C GNU General Public License v3.0 UpdatedMar 10, 2025 -
MZsearch Public
Forked from hdlugas/MZsearchCommand-line Python tool to perform spectral library matching to identify compounds with host of preprocessing transformations and silmilarity measures
Python MIT License UpdatedFeb 7, 2025 -
mumemto Public
Forked from vikshiv/mumemtoMumemto: multi-MUM and MEM finding across pangenomes
C++ GNU General Public License v3.0 UpdatedJan 8, 2025 -
ONEcode Public
Forked from thegenemyers/ONEcode1-code framework: docs, C-library, and tools
C Other UpdatedAug 7, 2024 -
guidance-for-aws-sustainability-insights-framework-cli Public
Forked from aws-solutions-library-samples/guidance-for-aws-sustainability-insights-framework-cliTypeScript MIT No Attribution UpdatedMar 16, 2024 -
OptiType Public
Forked from FRED-2/OptiTypePrecision HLA typing from next-generation sequencing data
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 5, 2024 -
BURST Public
Forked from knights-lab/BURSTAn ultrafast optimal aligner for mapping large NGS data to large genome databases.
C GNU Affero General Public License v3.0 UpdatedAug 15, 2023 -
org-transclusion Public
Forked from nobiot/org-transclusionEmacs package to enable transclusion with Org Mode
Emacs Lisp GNU General Public License v3.0 UpdatedMay 10, 2023 -
metamlst Public
Forked from SegataLab/metamlstMetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.
Python MIT License UpdatedMar 2, 2023 -
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krakenuniq Public
Forked from fbreitwieser/krakenuniq🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
C++ UpdatedJun 3, 2022 -
SequenceTools Public
Forked from Computational-conSequences/SequenceToolsPrograms used in the lab for various tasks
Perl GNU General Public License v3.0 UpdatedMay 12, 2022 -
drep Public
Forked from MrOlm/drepRapid comparison and dereplication of genomes
Python UpdatedApr 5, 2022 -
prokka Public
Forked from tseemann/prokka⚡ ♒ Rapid prokaryotic genome annotation
Perl UpdatedMar 18, 2022 -
mothur.github.io Public
Forked from mothur/mothur.github.iowiki for the mothur software package
CSS Creative Commons Attribution 4.0 International UpdatedJan 6, 2022 -
RGAAT_v2 Public
Forked from wushyer/RGAAT_v2Add multiple thread function for genome comparison
Perl UpdatedSep 29, 2021 -
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ReSeq Public
Forked from schmeing/ReSeqMore realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
C++ MIT License UpdatedFeb 13, 2021 -
simuscop Public
Forked from qasimyu/simuscopa novel next-generation sequencing simulator using position and genomic contexts based error profiles
C++ GNU General Public License v3.0 UpdatedDec 18, 2020 -
SCORE Public
Forked from SiWolf/SCORESCORE - a consensus tool for detecting differentially expressed genes in bacteria
R GNU General Public License v3.0 UpdatedDec 14, 2020 -
Ragout Public
Forked from mikolmogorov/RagoutChromosome-level scaffolding using multiple references
Python Other UpdatedDec 8, 2020 -
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wtdbg2 Public
Forked from ruanjue/wtdbg2A fuzzy Bruijn graph approach to long noisy reads assembly
C GNU General Public License v3.0 UpdatedNov 15, 2018 -
Rarefaction Public
Forked from hildebra/RarefactionRarefaction scripts
C++ GNU General Public License v2.0 UpdatedSep 19, 2018 -
mothur Public
Forked from mothur/mothurWelcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to…
C++ GNU General Public License v3.0 UpdatedJun 21, 2018 -
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phyloseq-extended Public
Forked from mahendra-mariadassou/phyloseq-extendedVarious customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" provided by the platforms Migale and Genotoul
R GNU General Public License v3.0 UpdatedFeb 21, 2018 -
trinityrnaseq Public
Forked from trinityrnaseq/trinityrnaseqTrinity RNA-Seq de novo transcriptome assembly
Perl BSD 3-Clause "New" or "Revised" License UpdatedFeb 6, 2018 -
anvio Public
Forked from merenlab/anvioAn analysis and visualization platform for 'omics data
Python GNU General Public License v3.0 UpdatedFeb 6, 2018
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