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gget Public
Forked from pachterlab/gget🧬 gget enables efficient querying of genomic reference databases
Python BSD 2-Clause "Simplified" License UpdatedOct 9, 2025 -
enformer_fine_tuning Public
Forked from shirondru/enformer_fine_tuningFor fine-tuning Enformer using paired WGS & gene expression data
Python MIT License UpdatedSep 24, 2025 -
ATOMICA Public
Forked from mims-harvard/ATOMICAATOMICA: Learning Universal Representations of Intermolecular Interactions
Python MIT License UpdatedSep 16, 2025 -
blitzgsea Public
Forked from MaayanLab/blitzgseaFast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for accurate p-value estimation.
Jupyter Notebook Apache License 2.0 UpdatedAug 25, 2025 -
pager Public
PAGE algorithm run and downstream analysis
Jupyter Notebook MIT License UpdatedAug 23, 2025 -
RNAMultiOmics Public
A multi-omics analytic framework to study RNA dynamics
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TDC Public
Forked from mims-harvard/TDCTherapeutics Data Commons: Artificial Intelligence Foundation for Therapeutic Science
Jupyter Notebook MIT License UpdatedJul 9, 2025 -
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python-pfam Public
Forked from AlbertoBoldrini/python-pfamProgrammaing interface for Pfam database
Python MIT License UpdatedApr 9, 2025 -
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pyCCG Public
python toolbox for Computational Chemical Genomics (CCG) research projects
Python MIT License UpdatedMar 24, 2025 -
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arc-virtual-cell-atlas Public
Forked from ArcInstitute/arc-virtual-cell-atlasArc Virtual Cell Atlas
Jupyter Notebook UpdatedFeb 27, 2025 -
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shokat-lab Public
Forked from UCSF-CMP/shokat-labA new website for the shokat lab
SCSS MIT License UpdatedFeb 11, 2025 -
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squab Public
Forked from zaeleus/squabAlignment-based gene expression quantification
Rust MIT License UpdatedFeb 4, 2025 -
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rmats2sashimiplot Public
Forked from Xinglab/rmats2sashimiplotPython GNU General Public License v2.0 UpdatedJan 21, 2025 -
splam Public
Forked from Kuanhao-Chao/splam✂️ Deep learning-based splice site predictor that improves spliced alignments
C++ UpdatedJan 16, 2025 -
HW1-FAST-AQ-Parser Public
Forked from BMI203-2025/HW1-FAST-AQ-ParserJupyter Notebook MIT License UpdatedJan 14, 2025 -
scez Public
Single Cell Analysis, Easy Mode!
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ezformer Public
Run enformer like models, get prediction tracks, and perform benchmarking
Python MIT License UpdatedJan 5, 2025
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