Subtyping tool for multi-omic data

Command-line utility to color objects of a KEGG pathway with arbitrary colors

FastPCA using PRIMME

the pangenome graph builder

Structural variant toolkit for VCFs

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

Fast HLA type inference from whole-genome data

Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

A comprehensive tutorial about GWAS and PRS

Inference of ploidy and heterozygosity structure using whole genome sequencing data

Pipeline for annotating genomes using long read transcriptomics data with pinfish

qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.

Tools to annotate genomes using long read transcriptomics data

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

A tool to identify, orient, trim and rescue full length cDNA reads

Analysis components from Oxford Nanopore Research

Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data

Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.

Filtering and trimming of long read sequencing data

Structural variant caller

Characterization of Germline variants

Microsatellite Analysis for Normal-Tumor InStability

Colocalization analysis of genetic association signals

Unix, R and python tools for genomics and data science

Toolset for SV simulation, comparison and filtering

Application for inferring subclonal composition and evolution from whole-genome sequencing data.

GLASS consortium

A high-performance, Pythonic language for bioinformatics