Stars
A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning …
A Python Package to Tackle the Curse of Imbalanced Datasets in Machine Learning
A simplified implementation of DSSP algorithm for PyTorch and NumPy
A Latex style and template for paper preprints (based on NIPS style)
Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Repository containing pipelines developed for the SNAC-DB (Structural NANOBODY® VHH and Antibody Complex Database). SNAC-DB is ML-ready curation of the Protein Data Bank (PDB) for NANOBODY® VHH and…
IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.
DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
Fold Conditioned protein design pipeline based on AF2Multimer Hallucination
🎨 UI for monitoring your Metaflow executions!
Fast indexing and search of discontinuous motifs in protein structures
PyTorch Extension Library of Optimized Graph Cluster Algorithms
Official repository for the Boltz biomolecular interaction models
A language model suite for numbering antigen receptor sequences.
Protein design and variant prediction using autoregressive generative models
CodonTransformer (1M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
A NumPy port of the foldseek code for encoding protein structures to 3di.
CHARMM and AMBER forcefields for OpenMM (with small molecule support)
An extremely fast Python package and project manager, written in Rust.
[Nature Machine Intelligence] ImmunoStruct enables multimodal deep learning for immunogenicity prediction
Dataset and package for working with protein-protein interactions in 3D