Stars
Lab for quantitative bioimage analysis experiments in Python
Python port of SymSpell: 1 million times faster spelling correction & fuzzy search through Symmetric Delete spelling correction algorithm
This is a high-performance implementation of a Prefix Trie to perform efficient fuzzy string matches.
Reference PyTorch implementation and models for DINOv3
More routines for operating on iterables, beyond itertools
A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.
Flax is a neural network library for JAX that is designed for flexibility.
A simple and reproducible way of using fonts in matplotlib
Simple and flexible progress bar for Jupyter Notebook and console
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
A small library for automatical adjustment of text position in matplotlib plots to minimize overlaps.
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
Physicochemical properties, indices and descriptors for amino-acid sequences.
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
python module to plot beautiful and highly customizable genome browser tracks
A library of free open source icons for science illustrations in biology and chemistry
Wasm powered Jupyter running in the browser 💡
JAX - A curated list of resources https://github.com/google/jax
Python package to read and write R RData and Rds files into/from pandas dataframes. No R or other external dependencies required.
A python package for simultaneous Hyperparameters Tuning and Features Selection for Gradient Boosting Models.
Scripts for using scanpy
Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)
A simple tool to select the optimal CUDA device based custom criteria.